HTOAs as separate file don't work that easy, it seems.
With a track #0 file in the folder:
[CUETools log; Date: 25.07.2015 01:42:58; Version: 2.1.6]
Pregap length 00:37:22.
Using preserved id, actual id is 0029f332-020751d1-f0128c10.
[CTDB TOCID: _WOd8IyfdioZDMYr2iT3OcJxIR0-] disk not present in database.
[AccurateRip ID: 00293975-01d790b7-e612670f] disk not present in database.
Renaming it to some other suffix than .flac:
[CUETools log; Date: 25.07.2015 01:50:03; Version: 2.1.6]
Pregap length 00:37:22.
[CTDB TOCID: oYHPje9PBhQMkSieHfBw3E0CGbI-] found.
Track | CTDB Status
1 | (74/76) Accurately ripped
2 | (73/76) Accurately ripped
3 | (74/76) Accurately ripped
4 | (75/76) Accurately ripped
5 | (75/76) Accurately ripped
6 | (74/76) Accurately ripped
7 | (74/76) Accurately ripped
8 | (74/76) Accurately ripped
9 | (75/76) Accurately ripped
10 | (75/76) Accurately ripped
11 | (75/76) Accurately ripped
12 | (73/76) Accurately ripped
13 | (73/76) Accurately ripped
14 | (74/76) Accurately ripped
15 | (66/76) Accurately ripped, or (3/76) differs in 119 samples @00:22:66,00:31:04,00:41:40,00:59:05,01:29:38,01:59:33,02:13:19,05:33:48
[AccurateRip ID: 00293975-01d790b7-e612670f] found.
Track [ CRC | V2 ] Status
01 [71923d00|20419d91] (058+049/389) Accurately ripped
02 [a58c81c1|b90e8eb0] (059+048/394) Accurately ripped
03 [b4aa75d7|560a4878] (058+048/390) Accurately ripped
04 [66216158|d6b055a8] (059+048/391) Accurately ripped
05 [d887be36|ddba7782] (059+048/390) Accurately ripped
06 [9717197b|f85a99e7] (059+048/393) Accurately ripped
07 [99053057|fe1e05c6] (058+047/388) Accurately ripped
08 [82512738|a7753b4e] (057+048/384) Accurately ripped
09 [86162db7|ede409bc] (056+048/384) Accurately ripped
10 [ccbe31ae|3b90b732] (056+047/382) Accurately ripped
11 [1f18a0f1|88322c44] (057+045/381) Accurately ripped
12 [bd79b309|0b3a7ac3] (057+046/383) Accurately ripped
13 [77a7f7bf|f8c574d5] (057+046/387) Accurately ripped
14 [623e3b7f|fe31b102] (054+045/376) Accurately ripped
15 [30c6ec37|9a9410f7] (048+041/347) Accurately ripped
Offsetted by -664:
01 [72bf97b3] (032/389) Accurately ripped
02 [3fe08e9d] (032/394) Accurately ripped
03 [bab3d68a] (032/390) Accurately ripped
04 [4806e82e] (032/391) Accurately ripped
05 [e813ed20] (032/390) Accurately ripped
06 [a8f5eb4b] (032/393) Accurately ripped
07 [5aaef06b] (032/388) Accurately ripped
08 [97d2ceb4] (031/384) Accurately ripped
09 [dca3580b] (032/384) Accurately ripped
10 [9e50dad0] (032/382) Accurately ripped
11 [a7c0b4ee] (032/381) Accurately ripped
12 [3334b3d0] (032/383) Accurately ripped
13 [8c992c06] (032/387) Accurately ripped
14 [d8080904] (031/376) Accurately ripped
15 [be7fc3d5] (030/347) Accurately ripped
Offsetted by -10:
01 [60768463] (010/389) Accurately ripped
02 [be0b3382] (011/394) Accurately ripped
03 [a5784fb1] (011/390) Accurately ripped
04 [937bb04a] (011/391) Accurately ripped
05 [8bd36e3c] (011/390) Accurately ripped
06 [d3b00105] (011/393) Accurately ripped
07 [cc053768] (011/388) Accurately ripped
08 [1a88b380] (010/384) Accurately ripped
09 [058fef2b] (010/384) Accurately ripped
10 [f7cf7881] (010/382) Accurately ripped
11 [e6b8d175] (010/381) Accurately ripped
12 [268c8092] (009/383) Accurately ripped
13 [b6fca936] (010/387) Accurately ripped
14 [7b178e0b] (010/376) Accurately ripped
15 [b9655e27] (010/347) Accurately ripped
Offsetted by 1228:
01 [f8294d33] (027/389) Accurately ripped
02 [d995907b] (028/394) Accurately ripped
03 [568ffa2e] (027/390) Accurately ripped
04 [12819ee9] (028/391) Accurately ripped
05 [2c3ae906] (027/390) Accurately ripped
06 [4d31ee39] (028/393) Accurately ripped
07 [6ed466cb] (028/388) Accurately ripped
08 [3eef405e] (025/384) Accurately ripped
09 [014d3490] (025/384) Accurately ripped
10 [a0486aad] (025/382) Accurately ripped
11 [0e0ed0af] (025/381) Accurately ripped
12 [9381e962] (026/383) Accurately ripped
13 [44ad5c0d] (026/387) Accurately ripped
14 [5122c4ae] (024/376) Accurately ripped
15 [f22bab39] (021/347) Accurately ripped
Offsetted by -712:
01 [25d2a0bd] (002/389) Accurately ripped
02 [31545d6a] (002/394) Accurately ripped
03 [56a5b93b] (002/390) Accurately ripped
04 [fa76c9eb] (002/391) Accurately ripped
05 [831eee53] (002/390) Accurately ripped
06 [4a363716] (002/393) Accurately ripped
07 [fb8d99cc] (002/388) Accurately ripped
08 [238f2be7] (002/384) Accurately ripped
09 [f243fc8f] (002/384) Accurately ripped
10 [db5d29d5] (002/382) Accurately ripped
11 [cc42ecce] (002/381) Accurately ripped
12 [c6cb4e2b] (002/383) Accurately ripped
13 [281a7942] (002/387) Accurately ripped
14 [13ab3714] (000/376) No match (V2 was not tested)
15 [3a39274b] (000/347) No match (V2 was not tested)
Offsetted by 1199:
01 [d25dcd37] (005/389) Accurately ripped
02 [bd098208] (005/394) Accurately ripped
03 [f63b7cfb] (005/390) Accurately ripped
04 [f24c65d9] (005/391) Accurately ripped
05 [eef9880e] (005/390) Accurately ripped
06 [3f0883f1] (005/393) Accurately ripped
07 [9d2befb8] (005/388) Accurately ripped
08 [f443517c] (005/384) Accurately ripped
09 [d7aee871] (005/384) Accurately ripped
10 [6fe61079] (005/382) Accurately ripped
11 [301082f3] (005/381) Accurately ripped
12 [7399d6e9] (004/383) Accurately ripped
13 [42d39081] (005/387) Accurately ripped
14 [6344686e] (005/376) Accurately ripped
15 [ea9bd3f1] (000/347) No match (V2 was not tested)
Offsetted by 2461:
01 [22e944fe] (000/389) No match (V2 was not tested)
02 [41d0ee1d] (000/394) No match (V2 was not tested)
03 [a76cddb3] (000/390) No match (V2 was not tested)
04 [49a9251e] (000/391) No match (V2 was not tested)
05 [7231bc88] (000/390) No match (V2 was not tested)
06 [70ddf565] (000/393) No match (V2 was not tested)
07 [9acfd76d] (000/388) No match (V2 was not tested)
08 [501d80cf] (000/384) No match (V2 was not tested)
09 [3cec643e] (000/384) No match (V2 was not tested)
10 [0b485f3c] (000/382) No match (V2 was not tested)
11 [993b26df] (000/381) No match (V2 was not tested)
12 [5bcdac8c] (000/383) No match (V2 was not tested)
13 [4c3d3326] (000/387) No match (V2 was not tested)
14 [0774e885] (000/376) No match (V2 was not tested)
15 [e0bd40c0] (000/347) No match (V2 was not tested)
Track Peak [ CRC32 ] [W/O NULL] [ LOG ]
-- 99,9 [A25B8A50] [C210CC14]
01 99,9 [6E4301D8] [DFD320FD] [DC642212]
02 99,9 [7974D1B4] [D1BE642C] [8943426A]
03 99,9 [DBC0715F] [D8CF503C]
04 99,9 [2B7EB1AF] [E507AE5E]
05 99,9 [F37A1113] [E94CB895]
06 91,2 [E433090A] [C9D483EB]
07 99,9 [E9B1F22C] [EF29B7CA]
08 99,9 [9A7164F5] [82C3D41B]
09 99,9 [308E68B0] [E3E3EF02]
10 99,9 [3080BFE8] [45EAA3A7]
11 99,9 [250DAA92] [39FE3226]
12 99,9 [9768A319] [30B7958B]
13 99,9 [E880057E] [37E1882C]
14 99,9 [028A6E2D] [F2442134]
15 99,9 [561D07BA] [F7E34CF0]